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73 lines
1.9 KiB
73 lines
1.9 KiB
#! /usr/bin/env python3
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import re, sys, shutil, os, re
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print("MAkinE AFX Collecting tool. Copyleft 2016 yorch")
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args = sys.argv[1:]
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name = args[0]
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dest = input("Please enter the destination path for your collect:\n")
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# tested on mac only
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def get_files( text_file ):
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report = open(str( text_file ), 'r')
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report_lines = []
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for line in report:
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report_lines.append(line)
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files = []
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for line in report_lines:
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line_content = line
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if line_content.find("\t/") != -1:
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files.append(line_content[1:-1])
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return files
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def get_seqs( text_file ):
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report = open(str( text_file ), 'r')
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report_lines = []
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for line in report:
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report_lines.append(line)
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seqs = []
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for line in report_lines:
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line_content = line
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if line_content.find("\tSequence") != -1:
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begin_path = line_content.find("at ")+3
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end_path = line_content.find(" with ") ### HACKISH: Try using regex to reliably finding out the end of the path.
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seqs.append(line_content[begin_path:end_path])
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return seqs
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def copy_files( files , dest ):
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for f in files:
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the_file=os.path.basename(f)
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if os.path.isfile(f):
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if not os.path.exists(dest + os.sep + the_file ):
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print("Copying: " + the_file + " ---> " + dest)
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shutil.copy(f,dest);
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else:
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print("Skipping: " + the_file)
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else:
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if not os.path.exists(dest + os.sep + the_file ):
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print("Copying folder: " + the_file + " ---> " + dest + os.sep + the_file )
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shutil.copytree(f, dest +os.sep + the_file );
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else:
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print("Skipping folder: " + the_file)
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#print(get_seqs( name ))
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copy_files( get_seqs( name ), dest )
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copy_files( get_files( name ), dest )
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