Hopefully this will finally fix the merging issues I had.

yScripts/y_BindBetween2.jsx

@@ -93,7 +93,7 @@ function YBindBetween2()
     }
     this.activate = function activate()
     {
-	this.yTool.yMainFunction();
+        yBindBetween2.yMainFunction();
     }
     this.run = function run()
     {
@@ -212,5 +212,5 @@ if (typeof(YTB)=='undefined')
 }
 else
 {
-    YTB.addTool(new YBindBetween2());
+    yBindBetween2 = YTB.addTool(new YBindBetween2());
 }

yScripts/y_colorProbe.jsx

@@ -63,7 +63,7 @@ function YColorProbe()
     }
     this.yMainFunction = function yMainFunction()
     {
-	app.beginUndoGroup(this.yTool.info.name); // yTool is a refernece to the Tool object, because THIS in this context returns the ButtonObject.... 
+	app.beginUndoGroup( yColorProbe.info.name ); // yTool is a refernece to the Tool object, because THIS in this context returns the ButtonObject.... 
 	
 	//It works with Sampled layers at a 100% scale only.
 	try
@@ -124,5 +124,5 @@ if (typeof(YTB)=='undefined')
 }
 else
 {
-    YTB.addTool(new YColorProbe());
+    yColorProbe = YTB.addTool(new YColorProbe());
 }

yScripts/y_puppetRig.jsx

@@ -4,9 +4,9 @@ function YPuppetRigTool()
     this.info =
     {
 	name : "yPuppetRig",
-	version : 0.33,
+	version : 0.0,
 	stage : "development",
-	description : "Tools for streamlining puppet-based animation rigs.",
+	description : "Tool to create nulls at puppet pin locations, and link the latter to the former.",
 	url : "yorchnet.com"
     };
     this.appearence =
@@ -98,7 +98,7 @@ function YPuppetRigTool()
     }
     this.activate = function activate()
     {
-	this.yTool.yMainFunction();
+        yPuppetRigTool.yMainFunction();
     }
     
     /**/